Currently, the University is running 68 Undergraduate, 104 Masters and 28 PhD programs. The existing academic units in the University comprise College of Agricultural and Environmental Sciences,College of Business and Economics, College of Computing and Informatics, College of Health and Medical Sciences, College of Social Science and Humanities, College of Law,College of Veterinary Medicine, College of Natural and Computational Science, Haramaya Institute of Technology, College of Education and Behavioral Sciences,  School of Graduate Studies and  Continuing and Distance Education Directorate which runs Continuing  Education (CEP) and Summer programs in various fields of study.


College of Agriculture and Environmental Science(CAES)

School of Animal and Range Science
School of Natural Resources and Environmental Science
School of Plant Sciences
School of Agricultural Economics and Agribusiness
Department of Rural Development and Agricultural Extension

College Of Business And Economics(CBE)

Department of Accounting
Department of Cooperatives
Department of Management
Department of Economics
Department Of Public Administration and Development Management

College Of Computing and Informatics

Department of Computer Science
Department of Information System
Department of Information Science
Department of Information Technology
Department Of Software Engineering
Department Of Statics

College Of Education And Behavioral Science

Department Of Pedagogy
Department Of Special Needs
Department Of Educational Planning And Management
English Language Improvement Centre

College Of Law

College of Health and Medical Sciences

School of Medicine
School of Pharmacy
School of Nursing and Midwifery
School of Public Health
Department of Environmental Health Sciences
Department of Medical Laboratory Science

College Of Natural and Computational Science

Department of Physics
Department of Mathematics
Department of Chemistry
Department of Biology
Sports Science Acedamy

College Of Social Sciences And Humanities

School of Foreign Language Studies
Department of History and Heritage Management
Department of Geography and Environmental Studies
Department of Afan Oromo, Literatures and communication
Department of Gender and Development Studies
Department of Sociology

College Of Veterinary Medicine